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Manpage of trimallgaps
trimallgaps
Section: User Commands (1)
Updated: April 3, 2002
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NAME
trimallgaps - a program to remove gap characters from sequence files
in FASTA format
SYNOPSIS
trimallgaps -i <infile> -o <outfile>
[options]
DESCRIPTION
trimallgaps will remove all gap characters (dashes, '-') from a file
of aligned sequences.
OPTIONS
trimallgaps accepts the following options:
- -i <infile>
-
specify the file containing a gapped alignment in FASTA format
- -o <outfile>
-
specify an outfile to which to write the output. If no outfile is specified,
the results are written to stdout
- -t
-
change the behavior of the program to only remove gaps from the end of the
alignment. This has the effect of removing all gap characters from the
left and right end of an aligment, up until the first ungapped base on
either side
AUTHOR
Kevin Thornton <k-thornton@uchicago.edu>
Index
- NAME
-
- SYNOPSIS
-
- DESCRIPTION
-
- OPTIONS
-
- AUTHOR
-
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Time: 18:00:54 GMT, November 24, 2002