typedefs.hpp

Go to the documentation of this file.

/*

Copyright (C) 2003-2009 Kevin Thornton, krthornt[]@[]uci.edu

Remove the brackets to email me.

This file is part of libsequence.

libsequence is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your option) any later version.

libsequence is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
GNU General Public License for more details.

You should have received a copy of the GNU General Public License
long with libsequence.  If not, see <http://www.gnu.org/licenses/>.

*/

#ifndef __SEQUENCE_TYPEDEFS_HPP
#define __SEQUENCE_TYPEDEFS_HPP
#include <vector>

//forward declarations from namespace std
namespace std
{
  template<typename A,typename B> struct pair;
  template<typename _char, typename _char_traits, typename allocator>
  struct basic_string;
  typedef struct basic_string<char, char_traits<char>, 
                              allocator<char> > string;
}
namespace Sequence
{
  typedef std::vector< std::pair<std::string,int> > CodonUsageTable;

  typedef std::pair< double, std::string > polymorphicSite;

  typedef std::vector< polymorphicSite > polySiteVector;
}
#endif

---