Sequence::segment Struct Reference
[Classes and functions related to simulating data under coalescent models]

A portion of a recombining chromosome. More...

#include <Sequence/Coalescent/SimTypes.hpp>

List of all members.

Public Member Functions
	segment ()
	default constructor initializes all members to 0
	segment (const int &b, const int &e, const int &d)
	constructor
Public Attributes
int	beg
int	end
int	desc

---

Detailed Description

A portion of a recombining chromosome.

A segment is a portion of a recombining chromosome. A segment is defined in terms of its mutational length. Therefore, a segment consisting of k sites has k-1 positions at which recombination events can occur.

This struct contains 3 public members:

• beg: the first site in the segment
• end: the last site in the segment
• desc: the individual in the sample to which the segment leads

Definition at line 81 of file SimTypes.hpp.

---

Constructor & Destructor Documentation

Sequence::segment::segment	(	const int &	b,
		const int &	e,
		const int &	d = 0
	)			[explicit]

constructor

Parameters:

	b	beg
	e	end
	d	desc

Definition at line 39 of file CoalescentSimTypes.cc.

---

The documentation for this struct was generated from the following files:

• SimTypes.hpp
• CoalescentSimTypes.cc