Modules

Here is a list of all modules:

• Divergence Statistics
  • Classes related to the calculation of Ka and Ks
    • Classes and functions relating to pathway weighting for Ka/Ks
• Molecular Population Genetics
  • Analysis of molecular population genetic data
  • Classes Related to Polymorphism tables
  • Classes and functions related to simulating data under coalescent models
• High-throughput sequencing
• General I/O
  • Classes for sequence I/O
  • Classes and functions dealing with alignments
• Operator overloads
• Statistics
• Classes and functions to aid in the calculations of the pathways between two codons
• Metaprogramming
• Function objects defined in the library
• Miscellany
• Portability