Sequence::WeightingScheme3 Class Reference
[Classes and functions relating to pathway weighting for Ka/Ks]
abstract interface to weighting schemes when codons differ at 3 positions More...
#include <Sequence/WeightingSchemes.hpp>
Inheritance diagram for Sequence::WeightingScheme3:
Public Member Functions | |
| virtual void | Calculate (const std::string &codon1, const std::string &codon2) const =0 |
| virtual double * | weights (void) const =0 |
Detailed Description
abstract interface to weighting schemes when codons differ at 3 positions
- Warning:
- Before deriving classes from this base, please study the implementations of Sequence::ThreeSubs. You should also study Sequence::GranthamWeights3 for an example of a class derived from this one
Definition at line 93 of file WeightingSchemes.hpp.
Member Function Documentation
| Sequence::WeightingScheme3::Calculate | ( | const std::string & | codon1, | |
| const std::string & | codon2 | |||
| ) | const [pure virtual] |
Calculate actually calculates the weights for each branch
- Parameters:
-
codon1 a std::string of length 3 representing a sense codon codon2 a std::string of length 3 representing a sense codon
Implemented in Sequence::GranthamWeights3, and Sequence::Unweighted3.
| Sequence::WeightingScheme3::weights | ( | void | ) | const [pure virtual] |
- Returns:
- a double * of size 6 (1 value for each branch)
Implemented in Sequence::GranthamWeights3, and Sequence::Unweighted3.
The documentation for this class was generated from the following file:
