Sequence::Unweighted3 Class Reference
[Classes and functions relating to pathway weighting for Ka/Ks]
weights all pathways equally More...
#include <Sequence/Unweighted.hpp>
Inheritance diagram for Sequence::Unweighted3:
Public Member Functions | |
| void | Calculate (const std::string &codon1, const std::string &codon2) const |
| double * | weights (void) const |
Detailed Description
weights all pathways equally
- Note:
- This is generally not what you want to use (it biases the result to a higher Ka/Ks ratio)
Definition at line 62 of file Unweighted.hpp.
Member Function Documentation
| void Sequence::Unweighted3::Calculate | ( | const std::string & | codon1, | |
| const std::string & | codon2 | |||
| ) | const [virtual] |
Calculate actually calculates the weights for each branch
- Parameters:
-
codon1 a std::string of length 3 representing a sense codon codon2 a std::string of length 3 representing a sense codon
Implements Sequence::WeightingScheme3.
Definition at line 47 of file Unweighted.cc.
| double * Sequence::Unweighted3::weights | ( | void | ) | const [virtual] |
- Returns:
- a double * of size 6 (1 value for each branch)
Implements Sequence::WeightingScheme3.
Definition at line 62 of file Unweighted.cc.
The documentation for this class was generated from the following files:
