Sequence::GranthamWeights3 Class Reference
[Classes and functions relating to pathway weighting for Ka/Ks]
Weights paths by Grantham's distances for codons differing at 3 sites. More...
#include <Sequence/GranthamWeights.hpp>
Inheritance diagram for Sequence::GranthamWeights3:
Public Member Functions | |
| GranthamWeights3 (Sequence::GeneticCodes genetic_code=Sequence::UNIVERSAL) | |
| void | Calculate (const std::string &codon1, const std::string &codon2) const |
| double * | weights (void) const |
Detailed Description
Weights paths by Grantham's distances for codons differing at 3 sites.
Definition at line 61 of file GranthamWeights.hpp.
Constructor & Destructor Documentation
| Sequence::GranthamWeights3::GranthamWeights3 | ( | Sequence::GeneticCodes | genetic_code = Sequence::UNIVERSAL |
) | [explicit] |
- Parameters:
-
genetic_code the code used to Translate the codons
Definition at line 109 of file GranthamWeights.cc.
Member Function Documentation
| void Sequence::GranthamWeights3::Calculate | ( | const std::string & | codon1, | |
| const std::string & | codon2 | |||
| ) | const [virtual] |
Calculate actually calculates the weights for each branch
- Parameters:
-
codon1 a std::string of length 3 representing a sense codon codon2 a std::string of length 3 representing a sense codon
Implements Sequence::WeightingScheme3.
Definition at line 120 of file GranthamWeights.cc.
| double * Sequence::GranthamWeights3::weights | ( | void | ) | const [virtual] |
- Returns:
- a double * of size 6 (1 value for each branch)
Implements Sequence::WeightingScheme3.
Definition at line 250 of file GranthamWeights.cc.
The documentation for this class was generated from the following files:
