SeqProperties.hpp File Reference

Function objects to ask simple questions about sequence composition. Declares Sequence::ambiguousNucleotide,Sequence::invalidPolyChar. More...

#include <functional>
#include <cctype>
#include <Sequence/Comparisons.hpp>

Go to the source code of this file.

Namespaces
namespace	Sequence
	The namespace in which this library resides.
Functions
bool	operator() (const char &c) const

---

Detailed Description

Function objects to ask simple questions about sequence composition. Declares Sequence::ambiguousNucleotide,Sequence::invalidPolyChar.

Definition in file SeqProperties.hpp.

---

Function Documentation

bool operator()

(

const char &

nucleotide

)

const [inline]

Returns:

true if c is not A,G,C, or T, false otherwise

Note:

Case-insensitive

Returns:

true if c is not in the set {A,G,C,T,N,-,.}, false otherwise. The period (.) can be used as an "identical to the 1st seq in a file" character, so should be considered valid

Note:

Case-insensitive

Definition at line 62 of file SeqProperties.hpp.