libsequence: PolyTableManip.cc Source File

00001 /*
00002 
00003 Copyright (C) 2003-2009 Kevin Thornton, krthornt[]@[]uci.edu
00004 
00005 Remove the brackets to email me.
00006 
00007 This file is part of libsequence.
00008 
00009 libsequence is free software: you can redistribute it and/or modify
00010 it under the terms of the GNU General Public License as published by
00011 the Free Software Foundation, either version 3 of the License, or
00012 (at your option) any later version.
00013 
00014 libsequence is distributed in the hope that it will be useful,
00015 but WITHOUT ANY WARRANTY; without even the implied warranty of
00016 MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
00017 GNU General Public License for more details.
00018 
00019 You should have received a copy of the GNU General Public License
00020 long with libsequence.  If not, see <http://www.gnu.org/licenses/>.
00021 
00022 */
00023 
00024 #include <Sequence/PolyTable.hpp>
00025 #include <Sequence/PolyTableManip.hpp>
00026 
00027 namespace Sequence
00028 {
00029   polySiteVector rotatePolyTable(const Sequence::PolyTable *data)
00039   {
00040     polySiteVector L;
00041     for (unsigned i = 0 ; i < data->numsites() ; ++i)
00042       {
00043         std::string s;
00044         for(unsigned j = 0 ; j < data->size() ; ++j)
00045           {
00046             s += (*data)[j][i];
00047           }
00048         L.push_back( polymorphicSite(data->position(i), s) );
00049       }
00050     return L;
00051   }
00052 }