delcaration of routines for comparing DNA sequences This file declares a set of functions useful for comparing two bits of sequence data--sequences, nucleotides, etc. More...
#include <string>#include <algorithm>#include <boost/static_assert.hpp>#include <boost/type_traits.hpp>#include <Sequence/SeqExceptions.hpp>#include <Sequence/SeqEnums.hpp>Go to the source code of this file.
Namespaces | |
| namespace | Sequence |
The namespace in which this library resides. | |
Functions | |
| Mutations | Sequence::TsTv (char i, char j) |
| Mutations | Sequence::TsTv (int i, int j) |
| bool | Sequence::Different (const std::string &seq1, const std::string &seq2, bool skip_missing, bool nucleic_acid) |
| template<typename T > | |
| bool | Sequence::notDifferent (const T &l, const T &r, const bool &skip_missing=1, const bool &nucleic_acid=1) |
| unsigned | Sequence::NumDiffs (const std::string &seq1, const std::string &seq2, bool skip_missing, bool nucleic_acid) |
| bool | Sequence::Gapped (const std::string &s) |
| template<typename Iterator > | |
| bool | Sequence::Gapped (Iterator beg, Iterator end, const char &gapchar= '-') |
| bool | Sequence::NotAGap (const char &c) |
delcaration of routines for comparing DNA sequences This file declares a set of functions useful for comparing two bits of sequence data--sequences, nucleotides, etc.
Routines to compare bases, sequences, etc. Declares Sequence::TsTv,Sequence::NumDiffs,Sequence::Gapped, Sequence::NotAGap
Definition in file Comparisons.hpp.
1.6.1